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Merge germplasm records (admin only)
  • Final

    • Merge germplasm records (admin only)

    Owned by Rica Aicel Mariano
    Last updated: Apr 22, 2024
    5 min read

     

    Combining two or more germplasm into a single record can now be done by administrators in the Germplasm tool. Breeders who would need to merge germplasm records should first send a request to the administrators before doing this step. Administrators can access the Merge tab in the Germplasm browser to proceed.

    From the Germplasm tool, click Merge. The tab will display the merge germplasm browser, where you will see all germplasm merge transactions in the system.

    A. File Status lets you know the progress of the merge indicated by a status.

    B. Template lets you download the prescribed CSV format for the merge file.

    C. Upload lets you add new germplasm merge in the system.

    D. Notification icon informs you about developments in the background processes.

    E. Reset grid icon reverts you to the default germplasm merge browser display.

    F. Personalized grid settings icon allows you to hide or unhide columns in the germplasm merge browser.

    G. Export icon generates a copy of the germplasm merge browser in various file formats.

    H. Validate merge transaction icon lets you validate the uploaded merge transaction.

    I. Delete merge transaction icon allows you to remove an uploaded germplasm merge transaction.

    J. Complete merge transaction icon lets you begin the germplasm merge process.

    K. Download file icon lets you download and save individual germplasm merge transactions in your device.

    L. View summary icon lets you see the completed merge and the information about it.

    M. View error logs icon lets you know what went wrong in the merging and validation process.

    Let’s start merging germplasm!

     

    Create a germplasm merge transaction

    Download germplasm merge template

    1. In the Merge tab, download the prescribed format by clicking Template.

     

    1. Fill out the CSV template with the germplasm merge information you want to upload to the system. The CSV template contains variables to be populated with valid information.

    2. Save the edited CSV file on your computer.

     

    Upload a merge germplasm

    1. In the Merge tab, Click Upload.

     

    1. In the Merge Germplasm File Upload modal window, Browse for the merge file you created.

     

    1. Select the file or drag and drop it in the modal window, then click Validate.

     

    1. Once successfully uploaded, the file status of the merge file will be changed to CREATED. To continue with the merge, click the Validate merge transaction button ().

     

    1. A preview of the germplasm records to be merged will be shown in the browser. Click Merge then Merge All.

     

    1. A data validation job will run in the background. The File Status column in the browser will show a status of VALIDATION IN PROGRESS.

    2. Once the data validation finishes successfully, the File Status column will display the MERGE READY status message.

    The status message VALIDATION ERROR is displayed when errors are detected in the CSV file.

     

    1. In the germplasm browser, click the Complete merge transaction ( ) to complete the merge transaction.

     

    1. A preview of the records to be merged will be shown in the browser. Once satisfied, Click Complete. Once done, the status of your merge germplasm will change to COMPLETED.

     

    Resolve a merge conflict

    A warning message is displayed if the system detects potential conflicts before completing the merge transaction.

    1. To view the conflicts, download the .csv file of the merge conflict report from the warning message.

     

    1. Click Resolve to submit the merge transaction for conflict resolution.

     

    1. A new page will appear with the merge conflict that was previously identified. The status of your merge transaction will change to resolving conflict.

     

    1. On the Conflict Resolution column, you can decide how you want to resolve the conflicting records by using the toggle. Turning the toggle on () means that you prefer to use the value from the merge germplasm and vice versa.

     

    1. Once done with resolving the conflict, click Submit then Submit All. Otherwise, click Back.

    Merge records with pending resolutions will remain in the transaction.

     

    1. You will be redirected back to the previous page with the merge germplasm transaction. Click Complete to finalize the transaction.

     

    You can also complete the transaction for merge transactions with the resolving conflict status by clicking the Complete merge transaction ( ) button.

     

    Delete a merge germplasm

    1. In the Merge tab, locate the merge germplasm transaction for deletion in the germplasm browser. Click the Delete merge transaction button () beside the transaction to be deleted.

     

    1. In the Delete File Upload Transaction modal window, click Confirm to delete the transaction in the system.

    Well done! The merging of germplasm records is successful and can be used in experiments.