Specify the planting arrangement (cross parent nursery)
- 1 Arrangement using Add Blocks
- 1.1 Add Blocks
- 1.1.1 Assign entries
- 1.1.2 Modify entries in a block
- 1.1.2.1 Delete entries
- 1.1.3 Reorder entry replicates
- 1.2 Manage blocks
- 1.2.1 Remove a block
- 1.2.2 Remove plots
- 1.2.3 Reorder plots
- 1.3 Overview
- 1.1 Add Blocks
- 2 Arrangement using Entry Order
After identifying your parents, you may now plan the arrangement of your entries. This involves adding blocks, assigning entries to them, and managing the blocks.
There are two options available when selecting the blocks' arrangement: Add blocks and Entry order.
Add blocks - allows you to add selected/all entries to each block.
Entry order - enables your planting arrangement in entry order regardless of the number of replicates specified for each entry.
From the Select arrangement subtab, you have the option to choose whether you’re going to add blocks first or arrange the order of your entries. To choose, toggle between Add Blocks and Entry Order.
Note that shifting to a different arrangement will nullify your updates.
Arrangement using Add Blocks
Choosing Add Blocks allows arranging entries by blocks and sub-blocks to different planting arrangements. To choose, toggle off to Add Blocks.
Add Blocks
You may add or remove your nursery blocks and sub-blocks in the Add Blocks subtab. This is where you will assign your entries and arrange their planting arrangements later on.
1. Specify the number of blocks you wish to add. Then, click Add.
2. Under the No. of sub-blocks column, specify the number of sub-blocks in each block as necessary. You can delete a block if needed by clicking the trash button beside each row.
3. Once satisfied, click Continue. You’ll be notified that you have successfully added blocks and will be redirected to the Assign entries subtab.
Assign entries
The Assign Entries subtab is where you assign entries to your blocks. It has three sections: (A) Filter entries, (B) Entries, and (C) Working List.
1. Click on Filter entries to specify your filters for your entries you wish to assign to a block. You can choose from range, entry role, parent type, germplasm name, and description. After that, click Submit.
Filtering entries is not required, but you are encouraged to use it. By default, all of the entries are loaded in the Entries section.
2. The Entries section will show the filtered results or your whole entries. You may also specify the number of the entries' replicates in No. of Reps column.
You may also bulk update the number of reps by selecting the entries and clicking the Bulk update button ().
3. Tick the checkboxes beside the entries you wish to add and assign to your blocks then click Manage Entry Reps.
4. The Working List section will reflect the entries you’ve added. Tick the checkboxes beside the entries you wish to assign to a block. Click Add to Block to add the entries to a block.
5. On the Assign entries to blocks modal window that appears, tick the options button of the block where you wish to assign your selected entries.
6. Specify details for your selected blocks. These include the no. of rows and columns in the block, starting corner, and plot numbering order. You may refer to the drop-down below for the values. Once done, click Save.
7. Click Assign More to assign more entries to other blocks. Otherwise, click Manage Blocks. If you choose the latter, you’ll be directed to Manage Blocks subtab.
Modify entries in a block
You may also add or overwrite entries in a block with existing entries.
1. Repeat steps 1-7 of assigning entries to a block.
2. Then on the Assign entries to blocks modal window, toggle on to Append or to add entries from a populated block. If you wish to Overwrite your entries in an already existing block, toggle off .
3. Once satisfied, click Save.
Delete entries
Tick the checkboxes of the entries you wish to remove from your working list. On the upper right of your working list, click the trash button .
Reorder entry replicates
1. Tick the of the entries you wish to remove from your working list. On the upper right of your working list, click the Reorder item button.
2. From the Reorder Entry Replicates modal window, select the reorder method between Cascade and Swap. Refer to the drop-down menu below for the conditions.
3. Change the order of the entries from the New Order Number column. Once done, click Confirm.
Manage blocks
From the Manage Blocks subtab, you’ll be able to view your planting arrangement with the entry number and plot number reflected and to make changes in your planting arrangement. You may also view the list of plots assigned to each block, and remove and reorder the plots.
1. On the left side, click on the tab of the block whose information you wish to update. You may also do this step and the remaining steps in Manage blocks for your sub-blocks.
2. Update the block’s information as necessary. You may change the no. of rows in block, the no. of columns in block, the starting corner, and the plot numbering order. To check how your planting arrangement will appear, click Preview Layout.
3. A preview of your planting arrangement will reflect on the right side. Once satisfied, click Save.
Remove a block
1. On the left side, click on the tab of the block whose information you wish to delete. Click Remove Block.
2. Once a confirmation appears, click Confirm to proceed with the deletion.
Remove plots
1. On the left side, click on the tab of the block whose information you wish to delete. Then, click Manage Plots.
2.Tick the checkbox(es) of the plot(s) you wish to remove. On the upper-right corner of the list, click Remove Plot.
Reorder plots
Drag and drop the plots to change their order. You will be notified that you have successfully reordered the plots in the block.
Overview
Once done with managing your blocks, you can click the Overview subtab to check the number of entries assigned to your blocks and to view your blocks' information. All entries must be included in their respective blocks and sub-blocks.
Once the assignment of blocks is successful, you may click Next on the upper-right corner of the screen.
Arrangement using Entry Order
Choosing Entry Order allows arranging entries into planting arrangements without assigning blocks and regardless of the number of replicates specified. To choose, toggle on to Entry Order.
On the Entry Order subtab, click Define dimension to update the arrangement information parameters.
Change the no. of rows in block, the no. of columns in block, the starting corner, and the plot numbering order. Once satisfied, click Save.
To check how your planting arrangement will appear, click Preview Layout. A preview of your planting arrangement will be reflected on the right side.
Update no. of replicates
Click on Update No. of Reps.
You may specify the number of the entries' replicates as necessary.
If you are satisfied with the number of replicates, click Save Changes. Once the arrangement is successful, click Next on the upper-right corner of the screen.
Upload planting arrangement
For entry order arrangements generated outside EBS, you can now upload them in the Planting Arrangement tab.
Click the Upload button ().
On the Upload Planting Arrangement modal window, click Browse on the lower right part of the screen, and select the file containing the planting arrangement from your local drive.
Click Validate to verify the upload.
A summary information panel will display the details of the arrangement. Click Confirm to proceed.
Your planting arrangement will be processed in the background. Once done, click the Notifications () from the toolbar and select the topmost update. This confirms the successful uploading of your planting arrangement.
Great job! You have selected your planting arrangement and arranged your entries. You can now start defining the protocols.